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    hpo-8 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 [ Caenorhabditis elegans ]

    Gene ID: 188513, updated on 2-Nov-2024

    Summary

    Official Symbol
    hpo-8
    Official Full Name
    Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8
    Primary source
    WormBase:WBGene00020517
    Locus tag
    CELE_T15B7.2
    See related
    AllianceGenome:WB:WBGene00020517
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gonadal sheath cell. Human ortholog(s) of this gene implicated in congenital myopathy. Orthologous to several human genes including HACD2 (3-hydroxyacyl-CoA dehydratase 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See hpo-8 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (6839289..6840256)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Chloride channel CLIC-like protein 1 Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene GRIP domain-containing protein Neighboring gene Ligand-Gated ion Channel Neighboring gene Fibrinogen C-terminal domain-containing protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydratase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in fatty acid elongation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sphingolipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in very long-chain fatty acid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8
    NP_504740.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6839289..6840256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072339.9NP_504740.2  Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504740.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O17040
      Conserved Domains (1) summary
      pfam04387
      Location:50210
      PTPLA; Protein tyrosine phosphatase-like protein, PTPLA