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    T15B7.1 Fibrinogen C-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 188512, updated on 2-Nov-2024

    Summary

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    Official Symbol
    T15B7.1
    Official Full Name
    Fibrinogen C-terminal domain-containing protein
    Primary source
    WormBase:WBGene00020516
    Locus tag
    CELE_T15B7.1
    See related
    AllianceGenome:WB:WBGene00020516
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in collagen-containing extracellular matrix and extracellular space. Orthologous to several human genes including FCN1 (ficolin 1); FCN2 (ficolin 2); and FCN3 (ficolin 3). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See T15B7.1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (6842737..6846671)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene GRIP domain-containing protein Neighboring gene Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8 Neighboring gene Ligand-Gated ion Channel Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in collagen-containing extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Fibrinogen C-terminal domain-containing protein
    NP_504743.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6842737..6846671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072342.6 → NP_504743.3  Fibrinogen C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504743.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5ZR75
      Conserved Domains (2) summary
      smart00034
      Location:21 → 138
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      cl00085
      Location:144 → 368
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    Nucleotide Protein
    Heading Accession and Version

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