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    LINC02611 long intergenic non-protein coding RNA 2611 [ Homo sapiens (human) ]

    Gene ID: 101927070, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02611provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2611provided by HGNC
    Primary source
    HGNC:HGNC:54060
    See related
    Ensembl:ENSG00000226791 AllianceGenome:HGNC:54060
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02611 in Genome Data Viewer
    Location:
    2q11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (98761063..98771898, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (99219506..99230332, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (99377526..99388361, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A Neighboring gene uncharacterized LOC124906050 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11803 Neighboring gene uncharacterized LOC107985922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11804 Neighboring gene Sharpr-MPRA regulatory region 13812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99364030-99364530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99364531-99365031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99386702-99387202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99387203-99387703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99389840-99390340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:99390341-99390841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:99391147-99392024 Neighboring gene NANOG hESC enhancer GRCh37_chr2:99395023-99395587 Neighboring gene RNA, U4 small nuclear 84, pseudogene Neighboring gene CRACD like Neighboring gene Sharpr-MPRA regulatory region 14605 Neighboring gene RNA, U7 small nuclear 46 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126337.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC109826, BX370315, BX383502, DB118793
      Related
      ENST00000419865.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      98761063..98771898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      99219506..99230332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)