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    clec-43 CUB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187664, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-43
    Official Full Name
    CUB domain-containing protein
    Primary source
    WormBase:WBGene00019917
    Locus tag
    CELE_R07C3.1
    See related
    AllianceGenome:WB:WBGene00019917
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in int1DL; int1DR; int1VL; and int1VR. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-43 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    8
    Sequence:
    Chromosome: II; NC_003280.10 (944066..946157)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Glycosyltransferase family 92 protein Neighboring gene FBA_2 domain-containing protein Neighboring gene F-box domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteins. Pees B, et al. PLoS Pathog, 2021 Apr. PMID 33793670, Free PMC Article
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CUB domain-containing protein
    NP_493859.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      944066..946157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061458.3 → NP_493859.2  CUB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493859.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16778
      Conserved Domains (2) summary
      smart00034
      Location:329 → 446
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      cl00049
      Location:462 → 552
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

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