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    hot-2 Homolog of Odr-2 (Two) [ Caenorhabditis elegans ]

    Gene ID: 180261, updated on 9-Dec-2024

    Summary

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    Official Symbol
    hot-2
    Official Full Name
    Homolog of Odr-2 (Two)
    Primary source
    WormBase:WBGene00001987
    Locus tag
    CELE_Y39B6A.48
    See related
    AllianceGenome:WB:WBGene00001987
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in olfactory behavior and response to odorant. Predicted to be active in axon and neuronal cell body. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See hot-2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (19174759..19187911)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Tetraspanin Neighboring gene Secreted protein;Transcriptional regulator Neighboring gene ncRNA Neighboring gene Iron-sulfur cluster assembly 1 homolog, mitochondrial Neighboring gene Serine/threonine specific protein phosphatases domain-containing protein;Serine/threonine-protein phosphatase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Caenorhabditis elegans odr-2 gene encodes a novel Ly-6-related protein required for olfaction. Chou JH, et al. Genetics, 2001 Jan. PMID 11139503, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in olfactory behavior IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in response to odorant IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Homolog of Odr-2 (Two)
    NP_001256846.1
    • Confirmed by transcript evidence
    NP_001256848.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19174759..19187911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269917.3 → NP_001256846.1  Homolog of Odr-2 (Two) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256846.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5SH00
      Conserved Domains (1) summary
      pfam06579
      Location:139 → 264
      Ly-6_related; Caenorhabditis elegans ly-6-related protein

    2. NM_001269919.3 → NP_001256848.1  Homolog of Odr-2 (Two) [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256848.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D5SH01, Q9BMH6
      Conserved Domains (1) summary
      pfam06579
      Location:51 → 176
      Ly-6_related; Caenorhabditis elegans ly-6-related protein
    Nucleotide Protein
    Heading Accession and Version

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