U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ZK1193.2 VWFA domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 180396, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ZK1193.2
    Official Full Name
    VWFA domain-containing protein
    Primary source
    WormBase:WBGene00022858
    Locus tag
    CELE_ZK1193.2
    See related
    AllianceGenome:WB:WBGene00022858
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ZK1193.2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    32
    Sequence:
    Chromosome: X; NC_003284.9 (406459..425635, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene F-box domain-containing protein Neighboring gene Late nodulin Neighboring gene tRNA-Gln Neighboring gene Cuticle collagen 19 Neighboring gene Homeobox protein dve-1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    VWFA domain-containing protein
    NP_001338858.1
    • Confirmed by transcript evidence
    NP_001380217.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      406459..425635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001351873.3 → NP_001338858.1  VWFA domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBP4
      Conserved Domains (3) summary
      smart00034
      Location:1133 → 1264
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00327
      Location:1936 → 2120
      VWA; von Willebrand factor (vWF) type A domain
      smart00604
      Location:1765 → 1895
      MD; MD domain

    2. NM_001392714.1 → NP_001380217.1  VWFA domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBR0
      Conserved Domains (1) summary
      smart00327
      Location:3 → 187
      VWA; von Willebrand factor (vWF) type A domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools