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    syp-6 Protein MRVI1;Thyroid receptor-interacting protein 11 [ Caenorhabditis elegans ]

    Gene ID: 172375, updated on 2-Nov-2024

    Summary

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    Official Symbol
    syp-6
    Official Full Name
    Protein MRVI1;Thyroid receptor-interacting protein 11
    Primary source
    WormBase:WBGene00019002
    Locus tag
    CELE_F57B10.4
    See related
    AllianceGenome:WB:WBGene00019002
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See syp-6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (6566125..6568954)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene GOLD domain-containing protein Neighboring gene BAG family molecular chaperone regulator 1 Neighboring gene Meiotic spindle formation protein 2 Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene CREB-H transcription factor homolog let-607 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of novel synaptonemal complex components in C. elegans. Hurlock ME, et al. J Cell Biol, 2020 May 4. PMID 32211899, Free PMC Article
    2. Sexual dimorphic regulation of recombination by the synaptonemal complex in C. elegans. Cahoon CK, et al. Elife, 2023 Oct 5. PMID 37796106, Free PMC Article
    3. Multivalent weak interactions between assembly units drive synaptonemal complex formation. Zhang Z, et al. J Cell Biol, 2020 May 4. PMID 32211900, Free PMC Article
    4. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans. Liu Y, et al. J Mol Cell Biol, 2021 Dec 6. PMID 34081106, Free PMC Article
    5. Skp1 proteins are structural components of the synaptonemal complex in C. elegans. Blundon JM, et al. Sci Adv, 2024 Feb 16. PMID 38354250, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Multivalent weak interactions between assembly units drive synaptonemal complex formation.
      Title: Multivalent weak interactions between assembly units drive synaptonemal complex formation.
    2. Identification of novel synaptonemal complex components in C. elegans.
      Title: Identification of novel synaptonemal complex components in C. elegans.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Protein MRVI1;Thyroid receptor-interacting protein 11
    NP_001379336.1
    • Confirmed by transcript evidence
    NP_001379337.1
    • Confirmed by transcript evidence
    NP_001379338.1
    • Confirmed by transcript evidence
    NP_491895.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      6566125..6568954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392463.1 → NP_001379337.1  Protein MRVI1 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9SUL5
      Conserved Domains (1) summary
      TIGR02168
      Location:136 → 349
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001392460.1 → NP_001379336.1  Thyroid receptor-interacting protein 11 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9SUX0
      Conserved Domains (1) summary
      TIGR02168
      Location:136 → 349
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. NM_059494.6 → NP_491895.1  Protein MRVI1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491895.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44741
      Conserved Domains (1) summary
      TIGR02168
      Location:136 → 349
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. NM_001392461.1 → NP_001379338.1  Thyroid receptor-interacting protein 11 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9SUK8
      Conserved Domains (1) summary
      TIGR02168
      Location:136 → 349
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version

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