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    egrh-1 Early growth response factor homolog 1 [ Caenorhabditis elegans ]

    Gene ID: 181580, updated on 9-Dec-2024

    Summary

    Official Symbol
    egrh-1
    Official Full Name
    Early growth response factor homolog 1
    Primary source
    WormBase:WBGene00007772
    Locus tag
    CELE_C27C12.2
    See related
    AllianceGenome:WB:WBGene00007772
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of oocyte maturation and negative regulation of ovulation. Located in nucleus and perinuclear region of cytoplasm. Is expressed in several structures, including body wall musculature; hermaphrodite somatic gonadal cell; intestine; pharynx; and sperm. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1D; Charcot-Marie-Tooth disease type 3; Charcot-Marie-Tooth disease type 4E; asthma; and motor peripheral neuropathy. Orthologous to several human genes including EGR1 (early growth response 1) and EGR3 (early growth response 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See egrh-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Sequence:
    Chromosome: X; NC_003284.9 (14845937..14849217)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Dipeptidyl peptidase family member 2 Neighboring gene DEgenerin Like Neighboring gene E3 ubiquitin-protein ligase LIN-1 Neighboring gene UNC93-like protein MFSD11

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of oocyte maturation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of ovulation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Early growth response factor homolog 1
    NP_510462.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      14845937..14849217
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078061.6NP_510462.2  Early growth response factor homolog 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510462.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q18250
      Conserved Domains (3) summary
      sd00017
      Location:376398
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:374398
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:418443
      zf-H2C2_2; Zinc-finger double domain