U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    scl-2 SCP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178251, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    scl-2
    Official Full Name
    SCP domain-containing protein
    Primary source
    WormBase:WBGene00009895
    Locus tag
    CELE_F49E11.10
    See related
    AllianceGenome:WB:WBGene00009895
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in extracellular space. Is expressed in intestinal cell. Orthologous to several human genes including PI15 (peptidase inhibitor 15). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See scl-2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (13057710..13059062)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene SCP domain-containing protein Neighboring gene SCP domain-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The transcriptional response of Caenorhabditis elegans to Ivermectin exposure identifies novel genes involved in the response to reduced food intake. Laing ST, et al. PLoS One, 2012. PMID 22348077, Free PMC Article
    2. Physiological and Immunological Regulations in Caenorhabditis elegans Infected with Salmonella enterica serovar Typhi. Sivamaruthi BS, et al. Indian J Microbiol, 2014 Mar. PMID 24426167, Free PMC Article
    3. Alterations in Caenorhabditis elegans and Cronobacter sakazakii lipopolysaccharide during interaction. Sivamaruthi BS, et al. Arch Microbiol, 2015 Mar. PMID 25416126
    4. Proton Microbeam Targeted Irradiation of the Gonad Primordium Region Induces Developmental Alterations Associated with Heat Shock Responses and Cuticle Defense in Caenorhabditis elegans. Beaudier P, et al. Biology (Basel), 2023 Oct 27. PMID 37997971, Free PMC Article
    5. Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia. Radeke LJ, et al. BMC Microbiol, 2020 Jun 19. PMID 32560629, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SCP domain-containing protein
    NP_001263803.1
    • Partially confirmed by transcript evidence
    NP_502503.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      13057710..13059062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070102.7 → NP_502503.1  SCP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502503.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20603
      Conserved Domains (1) summary
      smart00198
      Location:21 → 174
      SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

    2. NM_001276874.3 → NP_001263803.1  SCP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      J7RNK2
      Conserved Domains (1) summary
      cl00133
      Location:7 → 49
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous