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    scl-3 SCP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178252, updated on 9-Dec-2024

    Summary

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    Official Symbol
    scl-3
    Official Full Name
    SCP domain-containing protein
    Primary source
    WormBase:WBGene00009896
    Locus tag
    CELE_F49E11.11
    See related
    AllianceGenome:WB:WBGene00009896
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in extracellular space. Is expressed in g1AL; g1AR; g1P; g2L; and g2R. Orthologous to several human genes including GLIPR1 (GLI pathogenesis related 1) and R3HDML (R3H domain containing like). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See scl-3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (13059584..13060695)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene SCP domain-containing protein Neighboring gene SCP domain-containing protein Neighboring gene pseudo Neighboring gene SCP domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptional regulation of HLH-6-independent and subtype-specific genes expressed in the Caenorhabditis elegans pharyngeal glands. Ghai V, et al. Mech Dev, 2012 Sep-Dec. PMID 22759833
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SCP domain-containing protein
    NP_502504.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      13059584..13060695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070103.5 → NP_502504.1  SCP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EF50
      Conserved Domains (1) summary
      smart00198
      Location:23 → 176
      SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
    Nucleotide Protein
    Heading Accession and Version

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