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    col-2 Cuticle collagen 2 [ Caenorhabditis elegans ]

    Gene ID: 177872, updated on 9-Dec-2024

    Summary

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    Official Symbol
    col-2
    Official Full Name
    Cuticle collagen 2
    Primary source
    WormBase:WBGene00000593
    Locus tag
    CELE_W01B6.7
    See related
    AllianceGenome:WB:WBGene00000593
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See col-2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (10084439..10085451, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Kinetochore protein ndc-80 Neighboring gene Transthyretin-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of the histone gene family of Caenorhabditis elegans. Roberts SB, et al. J Mol Biol, 1987 Jul 5. PMID 3656446
    2. Structure and expression of Ascaris suum collagen genes: a comparison with Caenorhabditis elegans. Kingston IB, et al. Acta Trop, 1990 Jul. PMID 1978528
    3. Comparison of collagen gene sequences in Ascaris suum and Caenorhabditis elegans. Kingston IB, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2482444
    4. Expression of the Caenorhabditis elegans collagen genes col-1 and col-2 is developmentally regulated. Kramer JM, et al. J Biol Chem, 1985 Feb 10. PMID 2578467
    5. Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved. Shamansky LM, et al. Mol Biochem Parasitol, 1989 Nov. PMID 2615789

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural constituent of cuticle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cuticle collagen 2
    NP_501829.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10084439..10085451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069428.4 → NP_501829.1  Cuticle collagen 2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501829.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P17656
      Conserved Domains (1) summary
      smart01088
      Location:30 → 64
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P17656.1

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