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    lncRNA:CR42549 long non-coding RNA:CR42549 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 8674102, updated on 11-Sep-2024

    Summary

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    Official Symbol
    lncRNA:CR42549provided by FlyBase
    Official Full Name
    long non-coding RNA:CR42549provided by FlyBase
    Primary source
    FLYBASE:FBgn0260722
    Locus tag
    Dmel_CR42549
    See related
    AllianceGenome:FB:FBgn0260722
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR42549; Dmel\CR42549
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    Genomic context

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    See lncRNA:CR42549 in Genome Data Viewer
    Location:
    85D23-85D24; 3-48 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (9548104..9551806, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (5373826..5377528, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene mir-2283 stem loop Neighboring gene Lysine demethylase 3 Neighboring gene blistery Neighboring gene murashka Neighboring gene RNA-binding protein S1 Neighboring gene uncharacterized protein Neighboring gene Branched chain keto acid dehydrogenase E1 subunit alpha Neighboring gene Adaptor Protein complex 1, mu subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
    2. Seizure control through genetic and pharmacological manipulation of Pumilio in Drosophila: a key component of neuronal homeostasis. Lin WH, et al. Dis Model Mech, 2017 Feb 1. PMID 28067623, Free PMC Article
    3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
    5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • lncRNA:CR42549-RA; Dmel\lncRNA:CR42549-RA; CR42549-RA; Dmel\CR42549-RA
    • lncRNA:CR42549-RB; Dmel\lncRNA:CR42549-RB; CR42549-RB; Dmel\CR42549-RB
    • lncRNA:CR42549-RC; Dmel\lncRNA:CR42549-RC; CR42549-RC; Dmel\CR42549-RC
    • lncRNA:CR42549-RD; Dmel\lncRNA:CR42549-RD; CR42549-RD; Dmel\CR42549-RD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      9548104..9551806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_033165.1 RNA Sequence

      Status: REVIEWED

    2. NR_033166.1 RNA Sequence

      Status: REVIEWED

    3. NR_033167.1 RNA Sequence

      Status: REVIEWED

    4. NR_033164.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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