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    CG42390 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42600, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42390provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259736
    Locus tag
    Dmel_CG42390
    See related
    AllianceGenome:FB:FBgn0259736
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG33334; CG5740; Dmel\CG42390
    Old locus tag
    CG5740; Dmel_CG33334; Dmel_CG5740
    Summary
    Predicted to contribute to GTPase activator activity. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in germline cell and spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42390 in Genome Data Viewer
    Location:
    94A2-94A2; 3-74 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22120061..22133367)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (17945783..17959089)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ionotropic receptor 94b Neighboring gene Ionotropic receptor 94c Neighboring gene Shal K[+] channel interacting protein Neighboring gene long non-coding RNA:CR45224 Neighboring gene GLD2 poly(A) polymerase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. REPTOR and CREBRF encode key regulators of muscle energy metabolism. Saavedra P, et al. Nat Commun, 2023 Aug 15. PMID 37582831, Free PMC Article
    2. A genomic analysis of Drosophila somatic sexual differentiation and its regulation. Arbeitman MN, et al. Development, 2004 May. PMID 15056610
    3. A genetic screen for suppressors of Drosophila NSF2 neuromuscular junction overgrowth. Laviolette MJ, et al. Genetics, 2005 Jun. PMID 15834148, Free PMC Article
    4. The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan. Webber JL, et al. Genetics, 2013 Feb. PMID 23172856, Free PMC Article
    5. RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Jones CI, et al. Nucleic Acids Res, 2016 Jan 8. PMID 26656493, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42390-PB
    CG42390-PD
    CG42390-PE
    CG42390-PF
    CG42390-PG

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22120061..22133367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275896.1 → NP_001262825.1  uncharacterized protein Dmel_CG42390, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VD46
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    2. NM_001382087.1 → NP_001369028.1  uncharacterized protein Dmel_CG42390, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6H2EFV6
      Conserved Domains (1) summary
      COG1196
      Location:760 → 1183
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_169996.2 → NP_732702.3  uncharacterized protein Dmel_CG42390, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732702.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VD46
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    4. NM_206540.2 → NP_996263.2  uncharacterized protein Dmel_CG42390, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996263.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KS66
      Conserved Domains (2) summary
      COG1340
      Location:909 → 1214
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      pfam00261
      Location:777 → 1008
      Tropomyosin; Tropomyosin

    5. NM_001382088.1 → NP_001369029.1  uncharacterized protein Dmel_CG42390, isoform G [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6H2EGE0
      Conserved Domains (1) summary
      COG1196
      Location:760 → 1183
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A6H2EFV6 A0A6H2EFV6
    A0A6H2EGE0 A0A6H2EGE0
    Q7KS66 Q7KS66
    Q960N1 Q960N1
    Q9VD46 Q9VD46

    Gene LinkOut

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