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    CG11000 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40721, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11000provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0263353
    Locus tag
    Dmel_CG11000
    See related
    AllianceGenome:FB:FBgn0263353
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:HL04389; CG31555; Dmel\CG11000
    Summary
    Predicted to be involved in regulation of cell differentiation. Predicted to be active in membrane. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11000 in Genome Data Viewer
    Location:
    83C4-83C4; 3-47.5 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (5802328..5813258)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (1628050..1638980)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Histone PARylation factor 1 Neighboring gene Proteasome assembly chaperone 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Hpr1 Neighboring gene uncharacterized protein Neighboring gene Secretory 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The astrocyte-enriched gene deathstar plays a crucial role in the development, locomotion, and lifespan of D. melanogaster. Zhang X, et al. Fly (Austin), 2024 Dec. PMID 38884422, Free PMC Article
    2. TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets. Neugroschl A, et al. PLoS Comput Biol, 2023 Aug. PMID 37624852, Free PMC Article
    3. A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages. Corrales M, et al. Neural Dev, 2022 Aug 24. PMID 36002881, Free PMC Article
    4. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273
    5. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The astrocyte-enriched gene deathstar plays a crucial role in the development, locomotion, and lifespan of D. melanogaster.
      Title: The astrocyte-enriched gene deathstar plays a crucial role in the development, locomotion, and lifespan of D. melanogaster.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11000-PB
    CG11000-PC

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      5802328..5813258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001260007.1 → NP_001246936.1  uncharacterized protein Dmel_CG11000, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246936.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VNI6
      Conserved Domains (1) summary
      pfam00169
      Location:43 → 156
      PH; PH domain

    2. NM_001104220.3 → NP_001097690.1  uncharacterized protein Dmel_CG11000, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097690.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VNI6
      Conserved Domains (1) summary
      pfam00169
      Location:43 → 156
      PH; PH domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95S01 Q95S01
    Q9VNI6 Q9VNI6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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