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    CG5455 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43196, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5455provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039430
    Locus tag
    Dmel_CG5455
    See related
    AllianceGenome:FB:FBgn0039430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT17296; Dmel\CG5455
    Summary
    Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular matrix. Is expressed in dorsal head epidermis; embryonic dorsal epidermis; embryonic head epidermis; embryonic head sensory system; and embryonic ventral epidermis. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Orthologous to human SERAC1 (serine active site containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5455 in Genome Data Viewer
    Location:
    97B4-97B4; 3-91 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (26461527..26470008)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (22287249..22295730)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene plum Neighboring gene long non-coding RNA:CR46083 Neighboring gene long non-coding RNA:CR45226

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of germ plasm-enriched mRNAs in Drosophila melanogaster by the cDNA microarray technique. Szuperák M, et al. Gene Expr Patterns, 2005 Jun. PMID 15939385
    2. Genome-wide identification of alternatively spliced mRNA targets of specific RNA-binding proteins. Robida MD, et al. PLoS One, 2007 Jun 13. PMID 17565373, Free PMC Article
    3. Control of daily transcript oscillations in Drosophila by light and the circadian clock. Wijnen H, et al. PLoS Genet, 2006 Mar. PMID 16565745, Free PMC Article
    4. Specific transcriptional responses to juvenile hormone and ecdysone in Drosophila. Beckstead RB, et al. Insect Biochem Mol Biol, 2007 Jun. PMID 17517334, Free PMC Article
    5. A genomic analysis of Drosophila somatic sexual differentiation and its regulation. Arbeitman MN, et al. Development, 2004 May. PMID 15056610

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in extracellular matrix organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5455-PA
    CG5455-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      26461527..26470008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143224.4 → NP_651481.1  uncharacterized protein Dmel_CG5455, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651481.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBE6
      Related
      FBpp0084387

    2. NM_170273.2 → NP_733152.1  uncharacterized protein Dmel_CG5455, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_733152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBE6
      Related
      FBpp0084388
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VBE6 Q9VBE6

    Gene LinkOut

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