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    CG11030 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33805, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11030provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031736
    Locus tag
    Dmel_CG11030
    See related
    AllianceGenome:FB:FBgn0031736
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11030
    Summary
    Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in nucleolus and nucleoplasm. Is expressed in adult brain cell body rind. Orthologous to human NGDN (neuroguidin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11030 in Genome Data Viewer
    Location:
    25F3-25F4; 2-17 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (5724656..5762420)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (5724656..5762420)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene septin interacting protein 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR31912 Neighboring gene obstructor-E Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mechanical Control of Whole Body Shape by a Single Cuticular Protein Obstructor-E in Drosophila melanogaster. Tajiri R, et al. PLoS Genet, 2017 Jan. PMID 28076349, Free PMC Article
    2. Drosophila septin interacting protein 1 regulates neurogenesis in the early developing larval brain. Wei JY, et al. Sci Rep, 2022 Jan 7. PMID 34997175, Free PMC Article
    3. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. Tiwari P, et al. PLoS One, 2015. PMID 26488612, Free PMC Article
    4. The pentameric nucleoplasmin fold is present in Drosophila FKBP39 and a large number of chromatin-related proteins. Edlich-Muth C, et al. J Mol Biol, 2015 May 22. PMID 25813344, Free PMC Article
    5. Identification of Drosophila centromere associated proteins by quantitative affinity purification-mass spectrometry. Barth TK, et al. Data Brief, 2015 Sep. PMID 26306323, Free PMC Article

    See all (38) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleoplasm HDA PubMed 
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11030-PA
    CG11030-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      5724656..5762420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001273174.1 → NP_001260103.1  uncharacterized protein Dmel_CG11030, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260103.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B5X514, Q8IGY8, Q9VMM7
      Conserved Domains (1) summary
      pfam04000
      Location:23 → 103
      Sas10_Utp3; Sas10/Utp3/C1D family

    2. NM_135112.3 → NP_608956.1  uncharacterized protein Dmel_CG11030, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B5X514, Q8IGY8, Q9VMM7
      Related
      FBpp0078766
      Conserved Domains (1) summary
      pfam04000
      Location:23 → 103
      Sas10_Utp3; Sas10/Utp3/C1D family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IGY8 Q8IGY8
    Q9VMM7 Q9VMM7

    Gene LinkOut

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