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    CG18178 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39138, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG18178provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036035
    Locus tag
    Dmel_CG18178
    See related
    AllianceGenome:FB:FBgn0036035
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG18178
    Summary
    Predicted to enable rRNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of preribosome, large subunit precursor. Is expressed in adult head and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG18178 in Genome Data Viewer
    Location:
    67C5-67C5; 3-31 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (9717786..9719144, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (9710886..9712244, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene SH3 and PX domain containing 1 Neighboring gene visgun Neighboring gene small non-coding RNA 838 Neighboring gene uncharacterized protein Neighboring gene nbs Neighboring gene deflated

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleosome organization in the Drosophila genome. Mavrich TN, et al. Nature, 2008 May 15. PMID 18408708, Free PMC Article
    2. The Gene CG6767 Affects Olfactory Behavior in Drosophila melanogaster. Brown EB, et al. Behav Genet, 2019 May. PMID 30710192
    3. 2'3'-cGAMP triggers a STING- and NF-κB-dependent broad antiviral response in Drosophila. Cai H, et al. Sci Signal, 2020 Dec 1. PMID 33262294
    4. Stem Cell-Intrinsic, Seven-up-Triggered Temporal Factor Gradients Diversify Intermediate Neural Progenitors. Ren Q, et al. Curr Biol, 2017 May 8. PMID 28434858
    5. An Integrative Analysis of the InR/PI3K/Akt Network Identifies the Dynamic Response to Insulin Signaling. Vinayagam A, et al. Cell Rep, 2016 Sep 13. PMID 27626673, Free PMC Article

    See all (32) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG18178-PA
    CG18178-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      9717786..9719144 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140093.2 → NP_648350.1  uncharacterized protein Dmel_CG18178, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648350.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VT38
      Related
      FBpp0076141
      Conserved Domains (1) summary
      pfam14259
      Location:220 → 285
      RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)

    2. NM_001274718.1 → NP_001261647.1  uncharacterized protein Dmel_CG18178, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261647.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VT38
      Conserved Domains (1) summary
      pfam14259
      Location:220 → 285
      RRM_6; RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VT38 Q9VT38

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