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    RpS11 Ribosomal protein S11 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36321, updated on 9-Dec-2024

    Summary

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    Official Symbol
    RpS11provided by FlyBase
    Official Full Name
    Ribosomal protein S11provided by FlyBase
    Primary source
    FLYBASE:FBgn0033699
    Locus tag
    Dmel_CG8857
    See related
    AllianceGenome:FB:FBgn0033699
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe1D2; anon-MMS23; CG8857; clone 23; Dmel\CG8857; M(2)48E; RPS11; S11; S17
    Summary
    A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome and nucleolus. Colocalizes with nuclear chromosome. Is expressed in adult head; adult heart; and organism. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See RpS11 in Genome Data Viewer
    Location:
    48E8-48E9; 2-66 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12199024..12200815, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8086529..8088320, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Cytochrome P450 6g1 Neighboring gene Cytochrome P450 6g2 Neighboring gene Cytochrome P450 6t3 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene long non-coding RNA:CR45276 Neighboring gene Scavenger receptor class C, type II

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Zfrp8/PDCD2 Interacts with RpS2 Connecting Ribosome Maturation and Gene-Specific Translation. Minakhina S, et al. PLoS One, 2016. PMID 26807849, Free PMC Article
    2. Essential gene prediction in Drosophila melanogaster using machine learning approaches based on sequence and functional features. Aromolaran O, et al. Comput Struct Biotechnol J, 2020. PMID 32257045, Free PMC Article
    3. Visualization of the joining of ribosomal subunits reveals the presence of 80S ribosomes in the nucleus. Al-Jubran K, et al. RNA, 2013 Dec. PMID 24129492, Free PMC Article
    4. Fluorescent protein tagging confirms the presence of ribosomal proteins at Drosophila polytene chromosomes. Rugjee KN, et al. PeerJ, 2013. PMID 23638349, Free PMC Article
    5. New partners in regulation of gene expression: the enhancer of Trithorax and Polycomb Corto interacts with methylated ribosomal protein l12 via its chromodomain. Coléno-Costes A, et al. PLoS Genet, 2012. PMID 23071455, Free PMC Article

    See all (68) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    colocalizes_with nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein S11
    Names
    CG8857-PB
    CG8857-PC
    RpS11-PB
    RpS11-PC
    anon-fast-evolving-1D2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      12199024..12200815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_165868.2 → NP_725114.1  ribosomal protein S11, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725114.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C4JD62, E2QC50, Q0E9B6
      UniProtKB/TrEMBL
      A0A1B2AJL4, L0CPM0, L0CQQ8, L0CR49
      Related
      FBpp0087115
      Conserved Domains (1) summary
      PTZ00241
      Location:1 → 155
      PTZ00241; 40S ribosomal protein S11; Provisional

    2. NM_165869.3 → NP_725115.1  ribosomal protein S11, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725115.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8U9, C4JD65
      Related
      FBpp0087114
      Conserved Domains (1) summary
      PTZ00241
      Location:1 → 154
      PTZ00241; 40S ribosomal protein S11; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8U9 A1Z8U9
    Q0E9B6.1 Q0E9B6

    Gene LinkOut

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