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    CG30020 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36156, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CG30020provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050020
    Locus tag
    Dmel_CG30020
    See related
    AllianceGenome:FB:FBgn0050020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BEST:LD40262; CG12941; CG18353; Dmel\CG30020; p190
    Summary
    Enables DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG30020 in Genome Data Viewer
    Location:
    47C5-47C5; 2-63 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (10886810..10893191)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (6774315..6780696)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Hydroxyacid oxidase Neighboring gene uncharacterized protein Neighboring gene mir-1008 stem loop Neighboring gene cag Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase (ubiquinone) B14 subunit Neighboring gene RNA polymerase II, I and III subunit E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A transcriptional network controlling glial development in the Drosophila visual system. Bauke AC, et al. Development, 2015 Jun 15. PMID 26015542
    2. Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster. Krystel J, et al. Gene, 2013 Jan 10. PMID 23085320, Free PMC Article
    3. TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Hochheimer A, et al. Nature, 2002 Nov 28. PMID 12459787
    4. An RNA-interference screen in Drosophila to identify ZAD-containing C2H2 zinc finger genes that function in female germ cells. Shapiro-Kulnane L, et al. G3 (Bethesda), 2021 Jan 18. PMID 33561227, Free PMC Article
    5. ZAD-Domain Is Essential for Nuclear Localization of Insulator Proteins in Drosophila melanogaster. Zolotarev NA, et al. Acta Naturae, 2016 Jul-Sep. PMID 27795848, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription cis-regulatory region binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG30020-PA
    CG30020-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      10886810..10893191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136783.3 → NP_610627.2  uncharacterized protein Dmel_CG30020, isoform A [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JQY8
      Related
      FBpp0087330
      Conserved Domains (2) summary
      sd00017
      Location:1180 → 1203
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam07776
      Location:25 → 106
      zf-AD; Zinc-finger associated domain (zf-AD)

    2. NM_001273946.1 → NP_001260875.1  uncharacterized protein Dmel_CG30020, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KEI8
      Conserved Domains (2) summary
      sd00017
      Location:1141 → 1164
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam07776
      Location:25 → 106
      zf-AD; Zinc-finger associated domain (zf-AD)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KEI8 A0A0B4KEI8
    Q7JQY8 Q7JQY8
    Q8T032 Q8T032

    Gene LinkOut

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