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    CG43861 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35284, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG43861provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0264443
    Locus tag
    Dmel_CG43861
    See related
    AllianceGenome:FB:FBgn0264443
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG12508; CG13966; Dmel\CG43861
    Old locus tag
    Dmel_CG12508; Dmel_CG13966
    Summary
    Is expressed in several structures, including anal pad primordium; embryonic anal pad; embryonic dorsal epidermis; embryonic ventral epidermis; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG43861 in Genome Data Viewer
    Location:
    38A8-38B1; 2-54 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (19968684..20017282, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (19968684..20017282, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43620 Neighboring gene Olfactory-specific 9 Neighboring gene Helical Factor Neighboring gene long non-coding RNA:CR44908 Neighboring gene Arylalkylamine N-acetyltransferase-like 3 Neighboring gene short neuropeptide F precursor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary Dynamics of Abundant Stop Codon Readthrough. Jungreis I, et al. Mol Biol Evol, 2016 Dec. PMID 27604222, Free PMC Article
    2. Minos as a genetic and genomic tool in Drosophila melanogaster. Metaxakis A, et al. Genetics, 2005 Oct. PMID 15972463, Free PMC Article
    3. Spitz from the retina regulates genes transcribed in the second mitotic wave, peripodial epithelium, glia and plasmatocytes of the Drosophila eye imaginal disc. Firth LC, et al. Dev Biol, 2007 Jul 15. PMID 17553483, Free PMC Article
    4. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article
    5. Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits. Durham MF, et al. Nat Commun, 2014 Jul 8. PMID 25000897

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG43861-PA
    CG43861-PB
    CG43861-PC
    CG43861-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      19968684..20017282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299164.1 → NP_001286093.1  uncharacterized protein Dmel_CG43861, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286093.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0PUY5, Q9VIQ2
      Conserved Domains (1) summary
      pfam12004
      Location:106 → 196
      DUF3498; Domain of unknown function (DUF3498)

    2. NM_136173.3 → NP_610017.1  uncharacterized protein Dmel_CG43861, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610017.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0PUY5, Q9VIQ2
      Related
      FBpp0304821
      Conserved Domains (1) summary
      pfam12004
      Location:106 → 196
      DUF3498; Domain of unknown function (DUF3498)

    3. NM_001273686.1 → NP_001260615.1  uncharacterized protein Dmel_CG43861, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260615.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0PUY5, M9PDT0

    4. NM_001169548.1 → NP_001163019.1  uncharacterized protein Dmel_CG43861, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163019.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0PUW4, C0PUY5
      Conserved Domains (1) summary
      pfam12004
      Location:106 → 196
      DUF3498; Domain of unknown function (DUF3498)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0PUW4 C0PUW4
    M9PDT0 M9PDT0
    Q9VIQ2 Q9VIQ2

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