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    CG17233 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40220, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG17233provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036958
    Locus tag
    Dmel_CG17233
    See related
    AllianceGenome:FB:FBgn0036958
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG6918; Dmel\CG17233
    Summary
    Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG17233 in Genome Data Viewer
    Location:
    77A3-77A3; 3-47 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (20233173..20241903, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (20226273..20235003, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Suppressor of variegation 3-3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Clathrin light chain Neighboring gene retinal degeneration C Neighboring gene antisense RNA:CR43876 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of genes involved in the same pathways using a Hidden Markov Model-based approach. Senf A, et al. Bioinformatics, 2009 Nov 15. PMID 19720676
    2. Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster. Bogaerts-Márquez M, et al. Mol Ecol, 2021 Feb. PMID 33350518, Free PMC Article
    3. Neurological proteins are not enriched for repetitive sequences. Huntley MA, et al. Genetics, 2004 Mar. PMID 15082536, Free PMC Article
    4. In vivo profiling of the Zucchini proximal proteome in the Drosophila ovary. Nguyen TTM, et al. Development, 2023 Feb 15. PMID 36762624
    5. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. Leung W, et al. G3 (Bethesda), 2015 Mar 4. PMID 25740935, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG17233-PA
    CG17233-PC
    CG17233-PD
    CG17233-PE
    CG17233-PF
    CG17233-PG
    CG17233-PH
    CG17233-PI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      20233173..20241903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259912.1 → NP_001246841.1  uncharacterized protein Dmel_CG17233, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246841.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NEF4
      Conserved Domains (1) summary
      pfam13926
      Location:1212 → 1350
      DUF4211; Domain of unknown function (DUF4211)

    2. NM_001259911.1 → NP_001246840.1  uncharacterized protein Dmel_CG17233, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246840.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NDW6
      Conserved Domains (1) summary
      pfam13926
      Location:1233 → 1371
      DUF4211; Domain of unknown function (DUF4211)

    3. NM_168836.3 → NP_730499.1  uncharacterized protein Dmel_CG17233, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_730499.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IQV6
      Related
      FBpp0074620
      Conserved Domains (1) summary
      pfam13926
      Location:942 → 1080
      DUF4211; Domain of unknown function (DUF4211)

    4. NM_168837.3 → NP_730500.1  uncharacterized protein Dmel_CG17233, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_730500.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VW99, Q9VWA0
      Related
      FBpp0074619
      Conserved Domains (1) summary
      pfam13926
      Location:1234 → 1372
      DUF4211; Domain of unknown function (DUF4211)

    5. NM_140939.5 → NP_649196.3  uncharacterized protein Dmel_CG17233, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649196.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q58CJ9, Q8IQV5

    6. NM_001259910.2 → NP_001246839.1  uncharacterized protein Dmel_CG17233, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246839.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NFL3

    7. NM_001259913.1 → NP_001246842.1  uncharacterized protein Dmel_CG17233, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NG75

    8. NM_001259914.1 → NP_001246843.1  uncharacterized protein Dmel_CG17233, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q58CJ9, Q8IQV5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9NDW6 M9NDW6
    M9NEF4 M9NEF4
    M9NFL3 M9NFL3
    M9NG75 M9NG75
    Q8IQV5 Q8IQV5
    Q8IQV6 Q8IQV6
    Q95SV7 Q95SV7
    Q9VWA0 Q9VWA0

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