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    sit stuck in traffic [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42658, updated on 9-Dec-2024

    Summary

    Official Symbol
    sitprovided by FlyBase
    Official Full Name
    stuck in trafficprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038986
    Locus tag
    Dmel_CG5278
    See related
    AllianceGenome:FB:FBgn0038986
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG5278; Dmel\CG5278
    Summary
    Predicted to enable fatty acid elongase activity. Involved in cholesterol homeostasis; pupal development; and steroid biosynthetic process. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in embryonic large intestine; embryonic proventriculus; embryonic salivary gland duct; and larval foregut atrium. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1) and ELOVL7 (ELOVL fatty acid elongase 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See sit in Genome Data Viewer
    Location:
    94B4-94B4; 3-75 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22558342..22562572, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18384064..18388294, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Adiponectin receptor Neighboring gene antisense RNA:CR44062 Neighboring gene james bond Neighboring gene uncharacterized protein Neighboring gene COP9 signalosome subunit 6 Neighboring gene Diphthamide methyltransferase

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables fatty acid elongase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables fatty acid elongase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables fatty acid elongase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in fatty acid elongation ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in fatty acid elongation, monounsaturated fatty acid IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in fatty acid elongation, polyunsaturated fatty acid IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in fatty acid elongation, saturated fatty acid IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in pupal development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in sphingolipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in steroid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in very long-chain fatty acid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    stuck in traffic
    Names
    CG5278-PA
    sit-PA
    NP_651063.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22558342..22562572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142806.2NP_651063.1  stuck in traffic [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651063.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4QQC8, Q9VCY6
      Related
      FBpp0083674
      Conserved Domains (1) summary
      pfam01151
      Location:28252
      ELO; GNS1/SUR4 family