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    Alms1b Alstrom syndrome 1b [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31392, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Alms1bprovided by FlyBase
    Official Full Name
    Alstrom syndrome 1bprovided by FlyBase
    Primary source
    FLYBASE:FBgn0025387
    Locus tag
    Dmel_CG12184
    See related
    AllianceGenome:FB:FBgn0025387
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P
    Summary
    Colocalizes with ciliary basal body. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Alms1b in Genome Data Viewer
    Location:
    4C10-4C10; 1-8 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (4627380..4630936, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (4521413..4524969, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR32773 Neighboring gene uncharacterized protein Neighboring gene pebbled Neighboring gene Alstrom syndrome 1a Neighboring gene partner of numb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. salto/CG13164 is required for sperm head morphogenesis in Drosophila. Augière C, et al. Mol Biol Cell, 2019 Mar 1. PMID 30601696, Free PMC Article
    2. Alstrom syndrome gene is a stem-cell-specific regulator of centriole duplication in the Drosophila testis. Chen C, et al. Elife, 2020 Sep 23. PMID 32965218, Free PMC Article
    3. Multiple mechanisms drive genomic adaptation to extreme O(2) levels in Drosophila melanogaster. Iranmehr A, et al. Nat Commun, 2021 Feb 12. PMID 33579965, Free PMC Article
    4. Chromosomal distribution of PcG proteins during Drosophila development. Nègre N, et al. PLoS Biol, 2006 Jun. PMID 16613483, Free PMC Article
    5. Evolution of alternative splicing in newly evolved genes of Drosophila. Zhan Z, et al. Gene, 2011 Jan 1. PMID 20851753

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    colocalizes_with ciliary basal body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alstrom syndrome 1b
    Names
    Alms1b-PA
    Alms1b-PB
    Alms1b-PC
    CG12184-PA
    CG12184-PB
    CG12184-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      4627380..4630936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_131946.3 → NP_572174.3  alstrom syndrome 1b, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572174.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      O77274, Q9W4J0
      Conserved Domains (1) summary
      pfam15309
      Location:847 → 966
      ALMS_motif; ALMS motif

    2. NM_001272311.1 → NP_001259240.1  alstrom syndrome 1b, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259240.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PJ28, O77274
      Conserved Domains (1) summary
      pfam15309
      Location:847 → 959
      ALMS_motif; ALMS motif

    3. NM_001297935.1 → NP_001284864.1  alstrom syndrome 1b, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001284864.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O77274, Q961M4
      Conserved Domains (1) summary
      pfam15309
      Location:692 → 811
      ALMS_motif; ALMS motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PJ28 M9PJ28
    O77274 O77274
    Q961M4 Q961M4
    Q9W4J0 Q9W4J0

    Gene LinkOut

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