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    CG10949 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35310, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG10949provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032858
    Locus tag
    Dmel_CG10949
    See related
    AllianceGenome:FB:FBgn0032858
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    38C.46; CC34; Dmel\CG10949
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG10949 in Genome Data Viewer
    Location:
    38C6-38C6; 2-54 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (20415173..20416918, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (20415173..20416918, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Actin-related protein 2/3 complex, subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The computational analysis of scientific literature to define and recognize gene expression clusters. Raychaudhuri S, et al. Nucleic Acids Res, 2003 Aug 1. PMID 12888516, Free PMC Article
    2. Drosophila domino Exhibits Genetic Interactions with a Wide Spectrum of Chromatin Protein-Encoding Loci. Ellis K, et al. PLoS One, 2015. PMID 26555684, Free PMC Article
    3. Lsd1 restricts the number of germline stem cells by regulating multiple targets in escort cells. Eliazer S, et al. PLoS Genet, 2014 Mar. PMID 24625679, Free PMC Article
    4. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
    5. Gene expression during the life cycle of Drosophila melanogaster. Arbeitman MN, et al. Science, 2002 Sep 27. PMID 12351791

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG10949-PA
    CG10949-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      20415173..20416918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001299172.1 → NP_001286101.1  uncharacterized protein Dmel_CG10949, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286101.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIM6
      Conserved Domains (1) summary
      smart00595
      Location:140 → 226
      MADF; subfamily of SANT domain

    2. NM_136188.3 → NP_610032.1  uncharacterized protein Dmel_CG10949, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610032.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIM6
      Related
      FBpp0080899
      Conserved Domains (1) summary
      smart00595
      Location:140 → 226
      MADF; subfamily of SANT domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VIM6 Q9VIM6

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