U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG9346 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37381, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG9346provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034572
    Locus tag
    Dmel_CG9346
    See related
    AllianceGenome:FB:FBgn0034572
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg9346; Dmel\CG9346
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in RNA processing. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including central brain primordium; ganglia; hindgut anlage; hindgut proper primordium; and inclusive hindgut primordium. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG9346 in Genome Data Viewer
    Location:
    57B9-57B9; 2-92 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (21011970..21015628)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (16899475..16903133)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene grauzone Neighboring gene Souji Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene NADH dehydrogenase (ubiquinone) B14.7 subunit

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Candidate RNAi Screen Reveals Diverse RNA-Binding Protein Phenotypes in Drosophila Flight Muscle. Kao SY, et al. Cells, 2021 Sep 22. PMID 34685485, Free PMC Article
    2. Functional dissection of an innate immune response by a genome-wide RNAi screen. Foley E, et al. PLoS Biol, 2004 Aug. PMID 15221030, Free PMC Article
    3. Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. Crawford ED, et al. Cell Death Differ, 2012 Dec. PMID 22918439, Free PMC Article
    4. The drosophila melanogaster genome: translation factors and RNA binding proteins. Lasko P. J Cell Biol, 2000 Jul 24. PMID 10908586, Free PMC Article
    5. Comparative genomics and evolution of proteins involved in RNA metabolism. Anantharaman V, et al. Nucleic Acids Res, 2002 Apr 1. PMID 11917006, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG9346-PA

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      21011970..21015628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137691.3 → NP_611535.1  uncharacterized protein Dmel_CG9346 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611535.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K0X5, Q9W2N6
      Related
      FBpp0071455
      Conserved Domains (4) summary
      smart00582
      Location:480 → 619
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      cd12223
      Location:214 → 297
      RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
      pfam01805
      Location:373 → 423
      Surp; Surp module
      pfam08312
      Location:784 → 827
      cwf21; cwf21 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7K0X5 Q7K0X5
    Q9W2N6 Q9W2N6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous