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    1700019D03Rik RIKEN cDNA 1700019D03 gene [ Mus musculus (house mouse) ]

    Gene ID: 67080, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700019D03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700019D03 geneprovided by MGI
    Primary source
    MGI:MGI:1914330
    See related
    Ensembl:ENSMUSG00000043629 AllianceGenome:MGI:1914330
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    smAKAP; 2410136C24Rik
    Summary
    Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be located in plasma membrane. Is expressed in urinary system. Orthologous to human C2orf88 (chromosome 2 open reading frame 88). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 35.4), placenta adult (RPKM 4.0) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1700019D03Rik in Genome Data Viewer
    Location:
    1 C1.1; 1 26.99 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (52961483..53031816, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (52922324..52992657, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1543 Neighboring gene inositol polyphosphate-1-phosphatase Neighboring gene STARR-positive B cell enhancer ABC_E3275 Neighboring gene 3-hydroxyisobutyryl-Coenzyme A hydrolase Neighboring gene STARR-seq mESC enhancer starr_00905 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_00906 Neighboring gene STARR-seq mESC enhancer starr_00907 Neighboring gene myostatin Neighboring gene predicted gene, 24349

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
    2. Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. Thiagarajan RD, et al. PLoS One, 2011 Feb 28. PMID 21386911, Free PMC Article
    3. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
    4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC58779

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein kinase A regulatory subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small membrane A-kinase anchor protein
    Names
    UPF0733 protein C2orf88 homolog
    small membrane AKAP

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368274.1 → NP_001355203.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337, BU961456
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000140160.2, ENSMUST00000190831.7

    2. NM_001368276.1 → NP_001355205.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000140530.2, ENSMUST00000190726.2

    3. NM_001368277.1 → NP_001355206.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337, BU962204
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000140273.2, ENSMUST00000186266.2

    4. NM_001368278.1 → NP_001355207.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000110137.2, ENSMUST00000114493.2

    5. NM_001368279.1 → NP_001355208.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8

    6. NM_001368280.1 → NP_001355209.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337, BY272729
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000110136.2, ENSMUST00000114492.8

    7. NM_001368281.1 → NP_001355210.1  small membrane A-kinase anchor protein

      Status: VALIDATED

      Source sequence(s)
      AC129337
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000139750.2, ENSMUST00000191441.2

    8. NM_144953.3 → NP_659202.1  small membrane A-kinase anchor protein

      See identical proteins and their annotated locations for NP_659202.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All eight transcripts encode the same protein.
      Source sequence(s)
      AC129337
      Consensus CDS
      CCDS14949.1
      UniProtKB/Swiss-Prot
      Q9CPS8
      Related
      ENSMUSP00000055413.5, ENSMUST00000050567.11
      Conserved Domains (1) summary
      pfam15127
      Location:1 → 100
      SmAKAP; Small membrane A-kinase anchor protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      52961483..53031816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CPS8.1 GenPept UniProtKB/Swiss-Prot:Q9CPS8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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