U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852999, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Primary source
    SGD:S000006646
    Locus tag
    YNCG0028W
    See related
    AllianceGenome:SGD:S000006646
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translational elongation. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: VII
    Sequence:
    Chromosome: VII; NC_001139.9 (700675..700756)

    Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene Vma21p Neighboring gene Voa1p Neighboring gene tRNA-Lys Neighboring gene B-type cyclin CLB1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001139.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. In vivo identification of essential nucleotides in tRNALeu to its functions by using a constructed yeast tRNALeu knockout strain. Huang Q, et al. Nucleic Acids Res, 2012 Nov 1. PMID 22917587, Free PMC Article
    2. The genetic code of the fungal CTG clade. Santos MA, et al. C R Biol, 2011 Aug-Sep. PMID 21819941
    3. Suppressors of mRNA Decapping Defects Restore Growth Without Major Effects on mRNA Decay Rates or Abundance. Kim M, et al. Genetics, 2020 Dec. PMID 32998951, Free PMC Article
    4. A comprehensive tRNA deletion library unravels the genetic architecture of the tRNA pool. Bloom-Ackermann Z, et al. PLoS Genet, 2014 Jan. PMID 24453985, Free PMC Article
    5. Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation. Sharma S, et al. PLoS Genet, 2017 May. PMID 28542199, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Suppressors of mRNA Decapping Defects Restore Growth Without Major Effects on mRNA Decay Rates or Abundance.
      Title: Suppressors of mRNA Decapping Defects Restore Growth Without Major Effects on mRNA Decay Rates or Abundance.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    • Leucine tRNA (tRNA-Leu), predicted by tRNAscan-SE analysis; not essential for viability even though this is the only tRNA that decodes GAG codons

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials