Srrd SRR1 domain containing [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Srrdprovided by RGD
Official Full Name: SRR1 domain containingprovided by RGD
Primary source: RGD:1562579
See related: EnsemblRapid:ENSRNOG00000000662 AllianceGenome:RGD:1562579
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1562579
Summary: Predicted to be involved in regulation of circadian rhythm and regulation of heme biosynthetic process. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRRD (SRR1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Testes (RPKM 94.7), Lung (RPKM 47.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 12q16

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	12	NC_086030.1 (49955081..49960693)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	12	NC_051347.1 (44294675..44300287)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	12	NC_005111.4 (50315876..50321488)

Chromosome 12 - NC_086030.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AA957943 (e-PCR)
- UniSTS:261744

AA957943 (e-PCR)
- UniSTS:248210

BI282368 (e-PCR)
- UniSTS:249783

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in regulation of circadian rhythm	ISO Inferred from Sequence Orthology more info
involved_in regulation of heme biosynthetic process	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SRR1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.