U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Rell1 RELT-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289635, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rell1provided by RGD
    Official Full Name
    RELT-like 1provided by RGD
    Primary source
    RGD:1307468
    See related
    EnsemblRapid:ENSRNOG00000002192 AllianceGenome:RGD:1307468
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307468
    Summary
    Predicted to be involved in positive regulation of p38MAPK cascade. Predicted to be located in microtubule cytoskeleton. Predicted to be active in plasma membrane. Orthologous to human RELL1 (RELT like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 59.7), Adrenal (RPKM 54.1) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rell1 in Genome Data Viewer
    Location:
    14p11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (44672121..44732081)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (44318640..44378541)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (45982244..46041907)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene serine/threonine/tyrosine interacting protein, pseudogene 2 Neighboring gene uncharacterized LOC100911506 Neighboring gene PDCD10 and GCKIII kinases associated 1 Neighboring gene NACHT and WD repeat domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in microtubule cytoskeleton  
    located_in microtubule cytoskeleton  
    is_active_in plasma membrane  
    located_in plasma membrane  

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113776.2NP_001107248.1  RELT-like protein 1 precursor

      See identical proteins and their annotated locations for NP_001107248.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A096MJ67, B0BNL7
      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19
    2. NM_001434391.1NP_001421320.1  RELT-like protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A096MJ67, B0BNL7
    3. NM_001434392.1NP_001421321.1  RELT-like protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A096MJ67, B0BNL7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      44672121..44732081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250998.5XP_006251060.1  RELT-like protein 1 isoform X1

      Related
      ENSRNOP00000068475.1, ENSRNOT00000076881.4
      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19
    2. XM_039091719.2XP_038947647.1  RELT-like protein 1 isoform X1

      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19
    External link. Please review our privacy policy.