U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Smim33 small integral membrane protein 33 [ Mus musculus (house mouse) ]

    Gene ID: 73449, updated on 27-Nov-2024

    Summary

    Official Symbol
    Smim33provided by MGI
    Official Full Name
    small integral membrane protein 33provided by MGI
    Primary source
    MGI:MGI:1920699
    See related
    Ensembl:ENSMUSG00000073598 AllianceGenome:MGI:1920699
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700066B19Rik
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM33 (small integral membrane protein 33). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in colon adult (RPKM 4.2), large intestine adult (RPKM 3.6) and 6 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Smim33 in Genome Data Viewer
    Location:
    18 B2; 18 19.22 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (35859895..35863922)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (35726842..35730869)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C18 Neighboring gene STARR-seq mESC enhancer starr_44246 Neighboring gene endothelial cell surface expressed chemotaxis and apoptosis regulator Neighboring gene STARR-positive B cell enhancer mm9_chr18:35889997-35890297 Neighboring gene stimulator of interferon response cGAMP interactor 1 Neighboring gene STARR-positive B cell enhancer ABC_E9974 Neighboring gene STARR-seq mESC enhancer starr_44249 Neighboring gene STARR-seq mESC enhancer starr_44252 Neighboring gene 40S ribosomal protein S25 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 33

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033168.2NP_001028340.1  small integral membrane protein 33

      See identical proteins and their annotated locations for NP_001028340.1

      Status: PROVISIONAL

      Source sequence(s)
      AK162297
      Consensus CDS
      CCDS50252.1
      UniProtKB/Swiss-Prot
      Q3TS39
      Related
      ENSMUSP00000095222.3, ENSMUST00000097617.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      35859895..35863922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526290.4XP_006526353.1  small integral membrane protein 33 isoform X1