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    Cks1brt CDC28 protein kinase 1b, retrogene [ Mus musculus (house mouse) ]

    Gene ID: 624855, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cks1brtprovided by MGI
    Official Full Name
    CDC28 protein kinase 1b, retrogeneprovided by MGI
    Primary source
    MGI:MGI:3643620
    See related
    Ensembl:ENSMUSG00000062687 AllianceGenome:MGI:3643620
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6531; EG624855
    Summary
    Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Cks1brt in Genome Data Viewer
    Location:
    8 C3; 8 41.55 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (85878553..85900251)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (85151924..85173622)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 791 Neighboring gene predicted gene, 42031 Neighboring gene STARR-seq mESC enhancer starr_22151 Neighboring gene predicted gene, 33296 Neighboring gene zinc finger protein 46 pseudogene Neighboring gene olfactory receptor family 7 subfamily C member 19 Neighboring gene STARR-seq mESC enhancer starr_22152 Neighboring gene VPS35 retromer complex component

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cyclin-dependent protein kinase holoenzyme complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC624855

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037922.3NP_001033011.1  uncharacterized protein LOC624855

      See identical proteins and their annotated locations for NP_001033011.1

      Status: VALIDATED

      Source sequence(s)
      AC159275, AC163703
      Consensus CDS
      CCDS52622.1
      UniProtKB/TrEMBL
      Q3UNC9, Q9D0L3
      Related
      ENSMUSP00000147685.2, ENSMUST00000211617.2
      Conserved Domains (1) summary
      pfam01111
      Location:2590
      CKS; Cyclin-dependent kinase regulatory subunit

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      85878553..85900251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)