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    0610030E20Rik RIKEN cDNA 0610030E20 gene [ Mus musculus (house mouse) ]

    Gene ID: 68364, updated on 27-Nov-2024

    Summary

    Official Symbol
    0610030E20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 0610030E20 geneprovided by MGI
    Primary source
    MGI:MGI:1915614
    See related
    Ensembl:ENSMUSG00000058706 AllianceGenome:MGI:1915614
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500031N04Rik; 2810411C16Rik
    Summary
    Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 9.3), thymus adult (RPKM 9.1) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 0610030E20Rik in Genome Data Viewer
    Location:
    6 C1; 6 32.27 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (72324017..72330145)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (72347034..72353162)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene surfactant associated protein B Neighboring gene STARR-seq mESC enhancer starr_16282 Neighboring gene ubiquitin specific peptidase 39 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72295216-72295399 Neighboring gene transmembrane protein 150A Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72312603-72312712 Neighboring gene ring finger protein 181 Neighboring gene vesicle-associated membrane protein 5 Neighboring gene predicted gene, 52494

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0561 protein C2orf68 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026696.1NP_080972.1  UPF0561 protein C2orf68 homolog

      See identical proteins and their annotated locations for NP_080972.1

      Status: VALIDATED

      Source sequence(s)
      AC116115, BB844069, BC066053, BE945833
      Consensus CDS
      CCDS51808.1
      UniProtKB/Swiss-Prot
      Q149G0, Q9DCK6
      Related
      ENSMUSP00000076957.4, ENSMUST00000077783.5
      Conserved Domains (1) summary
      pfam10573
      Location:4126
      UPF0561; uncharacterized protein family UPF0561

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      72324017..72330145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506534.5XP_006506597.1  UPF0561 protein C2orf68 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506597.1

      Conserved Domains (1) summary
      pfam10573
      Location:116211
      UPF0561; Uncharacterized protein family UPF0561