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    Gm39918 predicted gene, 39918 [ Mus musculus (house mouse) ]

    Gene ID: 105244278, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm39918provided by MGI
    Official Full Name
    predicted gene, 39918provided by MGI
    Primary source
    MGI:MGI:5622803
    See related
    Ensembl:ENSMUSG00000125173 AllianceGenome:MGI:5622803
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in small intestine adult (RPKM 1.7), duodenum adult (RPKM 0.7) and 11 other tissues See more
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    Genomic context

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    See Gm39918 in Genome Data Viewer
    Location:
    2 E5; 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (122205314..122219669)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122374833..122389188)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene dual oxidase maturation factor 1 Neighboring gene dual oxidase 1 Neighboring gene STARR-seq mESC enhancer starr_05553 Neighboring gene STARR-positive B cell enhancer ABC_E10134 Neighboring gene Src homology 2 domain containing F Neighboring gene STARR-seq mESC enhancer starr_05555 Neighboring gene STARR-positive B cell enhancer ABC_E1253 Neighboring gene STARR-positive B cell enhancer ABC_E7854 Neighboring gene nuclear encoded tRNA histidine 4 (anticodon GTG) Neighboring gene nuclear encoded tRNA histidine 3 (anticodon GTG) Neighboring gene nuclear encoded tRNA histidine 5 (anticodon GTG) Neighboring gene predicted gene, 24409 Neighboring gene STARR-positive B cell enhancer mm9_chr2:122234690-122234991 Neighboring gene solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 Neighboring gene STARR-positive B cell enhancer ABC_E7855 Neighboring gene BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166176.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL844566

    2. NR_166177.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL844566
      Related
      ENSMUST00000268588.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      122205314..122219669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials