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    D530049I02Rik RIKEN cDNA D530049I02 gene [ Mus musculus (house mouse) ]

    Gene ID: 78718, updated on 17-Aug-2024

    Summary

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    Official Symbol
    D530049I02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D530049I02 geneprovided by MGI
    Primary source
    MGI:MGI:1925968
    See related
    Ensembl:ENSMUSG00000101812 AllianceGenome:MGI:1925968
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See D530049I02Rik in Genome Data Viewer
    Location:
    1; 1 C3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (73438127..73469938)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (73398968..73430779)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31254 Neighboring gene predicted gene 29185 Neighboring gene STARR-seq mESC enhancer starr_01300 Neighboring gene STARR-seq mESC enhancer starr_01301 Neighboring gene STARR-seq mESC enhancer starr_01302 Neighboring gene STARR-seq mESC enhancer starr_01303 Neighboring gene predicted gene, 31344 Neighboring gene STARR-seq mESC enhancer starr_01304 Neighboring gene pregnancy induced noncoding RNA Neighboring gene STARR-seq mESC enhancer starr_01305 Neighboring gene STARR-seq mESC enhancer starr_01306 Neighboring gene STARR-seq mESC enhancer starr_01307 Neighboring gene STARR-seq mESC enhancer starr_01308 Neighboring gene RIKEN cDNA C530043A13 gene Neighboring gene lactate dehydrogenase B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A noncoding RNA is a potential marker of cell fate during mammary gland development. Ginger MR, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16574773, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040605.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK021318
      Related
      ENSMUST00000186582.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      73438127..73469938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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