U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    E130008D07Rik RIKEN cDNA E130008D07 gene [ Mus musculus (house mouse) ]

    Gene ID: 545207, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    E130008D07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E130008D07 geneprovided by MGI
    Primary source
    MGI:MGI:3584523
    See related
    Ensembl:ENSMUSG00000117011 AllianceGenome:MGI:3584523
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in brain. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E18 (RPKM 3.6), CNS E14 (RPKM 2.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See E130008D07Rik in Genome Data Viewer
    Location:
    17 B3; 17 19.7 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (43456932..43469182, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (43146041..43158291, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily, member 21 Neighboring gene STARR-seq mESC enhancer starr_42581 Neighboring gene STARR-seq mESC enhancer starr_42583 Neighboring gene predicted gene, 34627 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:43369751-43370032 Neighboring gene predicted gene, 54007 Neighboring gene STARR-positive B cell enhancer mm9_chr17:43402088-43402388 Neighboring gene adhesion G protein-coupled receptor F1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045153.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK132380, BC072601
      Related
      ENSMUST00000233120.2

    2. NR_045154.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) differs in an internal exon, compared to variant 1.
      Source sequence(s)
      AK132380, CO044062
      Related
      ENSMUST00000232795.3

    3. NR_045155.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (3) has an alternate internal exon and an alternate splice site in the 5' region, and also has an alternate 3' terminal exon, compared to variant 1.
      Source sequence(s)
      AK053296, AK132380
      Related
      ENSMUST00000233163.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      43456932..43469182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.