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    Ptf1aos pancreas specific transcription factor 1a, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 102637107, updated on 17-Aug-2024

    Summary

    Official Symbol
    Ptf1aosprovided by MGI
    Official Full Name
    pancreas specific transcription factor 1a, opposite strandprovided by MGI
    Primary source
    MGI:MGI:3651438
    See related
    Ensembl:ENSMUSG00000085388 AllianceGenome:MGI:3651438
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13336
    Expression
    Biased expression in small intestine adult (RPKM 8.3), stomach adult (RPKM 4.6) and 4 other tissues See more
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    Genomic context

    See Ptf1aos in Genome Data Viewer
    Location:
    2 A3; 2 13.36 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19446319..19451485, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (19441508..19446674, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03820 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:19310470-19310705 Neighboring gene methionine sulfoxide reductase B2 Neighboring gene STARR-seq mESC enhancer starr_03823 Neighboring gene STARR-seq mESC enhancer starr_03825 Neighboring gene STARR-positive B cell enhancer ABC_E11703 Neighboring gene predicted gene, 33940 Neighboring gene predicted gene 13344 Neighboring gene RIKEN cDNA 1810010K12 gene Neighboring gene RIKEN cDNA 4921504E06 gene Neighboring gene pancreas specific transcription factor, 1a Neighboring gene STARR-seq mESC enhancer starr_03826 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19427465-19427766 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19450447-19450747 Neighboring gene STARR-seq mESC enhancer starr_03827

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Other Names

    • normal AK

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131924.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK053418
      Related
      ENSMUST00000122978.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      19446319..19451485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)