U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SNU71 Snu71p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 852896, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SNU71
    Official Full Name
    Snu71p
    Primary source
    SGD:S000003245
    Locus tag
    YGR013W
    See related
    AllianceGenome:SGD:S000003245; FungiDB:YGR013W; VEuPathDB:YGR013W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables RNA binding activity. Involved in mRNA splicing, via spliceosome. Part of U1 snRNP and U2-type prespliceosome. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SNU71 in Genome Data Viewer
    Location:
    chromosome: VII
    Exon count:
    1
    Sequence:
    Chromosome: VII; NC_001139.9 (514554..516416)

    Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene nicotinamide-nucleotide adenylyltransferase NMA2 Neighboring gene putative cysteine synthase Neighboring gene Msb2p Neighboring gene putative hydrolase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001139.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71. Ester C, et al. BMC Biochem, 2008 Nov 11. PMID 19014439, Free PMC Article
    2. Interaction of yeast eIF4G with spliceosome components: implications in pre-mRNA processing events. Kafasla P, et al. RNA Biol, 2009 Nov-Dec. PMID 19838078, Free PMC Article
    3. Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull. Rodgers ML, et al. RNA, 2015 May. PMID 25805862, Free PMC Article
    4. A targeted bypass screen identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for stable U1 snRNP/Pre-mRNA interaction. Hage R, et al. Mol Cell Biol, 2009 Jul. PMID 19451230, Free PMC Article
    5. A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast. Kress TL, et al. Mol Cell, 2008 Dec 5. PMID 19061647, Free PMC Article

    See all (60) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splicing, via spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of U2-type prespliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Snu71p
    NP_011527.1
    • Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001139.9 Reference assembly

      Range
      514554..516416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181142.1 → NP_011527.1  TPA: Snu71p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011527.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6ZV04, D6VUE9, P53207
      UniProtKB/TrEMBL
      B3LIK4, B5VIX2, C7GK82, C8Z8Q7, N1P3S3
      Conserved Domains (1) summary
      smart00311
      Location:547 → 620
      PWI; domain in splicing factors
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P53207.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools