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    Prrt4 proline-rich transmembrane protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 101359, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Prrt4provided by MGI
    Official Full Name
    proline-rich transmembrane protein 4provided by MGI
    Primary source
    MGI:MGI:2141677
    See related
    Ensembl:ENSMUSG00000079654 AllianceGenome:MGI:2141677
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D330027H18Rik
    Summary
    Predicted to be located in membrane. Orthologous to human PRRT4 (proline rich transmembrane protein 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in ovary adult (RPKM 9.0), lung adult (RPKM 4.6) and 12 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Prrt4 in Genome Data Viewer
    Location:
    6 A3.3; 6 12.35 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (29169229..29179583, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (29169230..29179584, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15433 Neighboring gene predicted gene, 25589 Neighboring gene RNA binding motif protein 28 Neighboring gene STARR-positive B cell enhancer ABC_E3646 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:29155327-29155436 Neighboring gene inosine monophosphate dehydrogenase 1 Neighboring gene STARR-positive B cell enhancer ABC_E8096 Neighboring gene STARR-seq mESC enhancer starr_15435 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:29182419-29182602 Neighboring gene predicted gene, 26021

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich transmembrane protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101443.1 → NP_001094913.1  proline-rich transmembrane protein 4 precursor

      Status: VALIDATED

      Source sequence(s)
      AK052319, AW455481
      Consensus CDS
      CCDS51734.1
      UniProtKB/Swiss-Prot
      B2RU40, E9QKZ9
      Related
      ENSMUSP00000123751.2, ENSMUST00000159200.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      29169229..29179583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504963.5 → XP_006505026.1  proline-rich transmembrane protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B2RU40, E9QKZ9

    2. XM_006504964.4 → XP_006505027.1  proline-rich transmembrane protein 4 isoform X1

      UniProtKB/Swiss-Prot
      B2RU40, E9QKZ9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RU40.3 GenPept UniProtKB/Swiss-Prot:B2RU40

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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