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    Altre aging liver Treg-expressed non-protein coding RNA [ Mus musculus (house mouse) ]

    Gene ID: 100504026, updated on 26-Oct-2024

    Summary

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    Official Symbol
    Altreprovided by MGI
    Official Full Name
    aging liver Treg-expressed non-protein coding RNAprovided by MGI
    Primary source
    MGI:MGI:3801721
    See related
    AllianceGenome:MGI:3801721
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16157
    Expression
    Biased expression in liver adult (RPKM 1.2), thymus adult (RPKM 0.2) and 2 other tissues See more
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    Genomic context

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    See Altre in Genome Data Viewer
    Location:
    7 C; 7 37.49 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (67916087..67926342, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (68266339..68276594, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor I receptor Neighboring gene predicted gene, 51487 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75350823-75351006 Neighboring gene pyroglutamyl-peptidase I-like Neighboring gene STARR-positive B cell enhancer ABC_E8177 Neighboring gene STARR-seq mESC enhancer starr_19114 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75434034-75434217 Neighboring gene family with sequence similarity 169, member B Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:75468056-75468239 Neighboring gene predicted gene 16158 Neighboring gene RIKEN cDNA 4933436H12 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A T(reg)-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver. Ding C, et al. Nat Aging, 2023 Jul. PMID 37277640
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A Treg-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver.
      Title: A T(reg)-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Clone Names

    • AC125275.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040340.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC125275, AI526811

    2. NR_040341.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two consecutive exons and includes an alternate exon in the 5' region, compared to variant 1.
      Source sequence(s)
      AK149394

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      67916087..67926342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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