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    Gata3un Gata3 upstream neighbor [ Mus musculus (house mouse) ]

    Gene ID: 77682, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gata3unprovided by MGI
    Official Full Name
    Gata3 upstream neighborprovided by MGI
    Primary source
    MGI:MGI:1924932
    See related
    Ensembl:ENSMUSG00000079602 AllianceGenome:MGI:1924932
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    linc_Gata3; 9230102O04Rik
    Summary
    Is active in basal dendrite. Is expressed in several structures, including central nervous system; hemolymphoid system gland; inner ear; liver; and salivary gland. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in bladder adult (RPKM 9.8), testis adult (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    See Gata3un in Genome Data Viewer
    Location:
    2 A1; 2 6.71 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (9887852..9894351, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (9883041..9889540, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9515681-9515868 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:9517012-9517347 Neighboring gene STARR-seq mESC enhancer starr_03623 Neighboring gene distal regulatory enhancer RNA of Gata3 Neighboring gene STARR-seq mESC enhancer starr_03624 Neighboring gene STARR-seq mESC enhancer starr_03625 Neighboring gene STARR-seq mESC enhancer starr_03626 Neighboring gene predicted gene, 54101 Neighboring gene STARR-seq mESC enhancer starr_03630 Neighboring gene GATA binding protein 3 Neighboring gene STARR-seq mESC enhancer starr_03633 Neighboring gene STARR-seq mESC enhancer starr_03634 Neighboring gene GATA binding protein 3 opposite strand Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene TATA-box binding protein associated factor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. Han X, et al. J Mol Cell Biol, 2018 Apr 1. PMID 29420831
    2. Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems. Ushakov K, et al. Sci Rep, 2017 Aug 17. PMID 28819115, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in basal dendrite IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040511.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK020309, AL928704
      Related
      ENSMUST00000125091.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      9887852..9894351 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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