Lrrc30 leucine rich repeat containing 30 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lrrc30provided by RGD
Official Full Name: leucine rich repeat containing 30provided by RGD
Primary source: RGD:1563832
See related: EnsemblRapid:ENSRNOG00000030389 AllianceGenome:RGD:1563832
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1563832
Summary: Predicted to be involved in intracellular signal transduction. Orthologous to human LRRC30 (leucine rich repeat containing 30). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 108.7) See more
Orthologs: human mouse all
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Genomic context

Location:: 9q38

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (115071263..115072931, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (107624479..107626147, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (115849029..115854043, complement)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in intracellular signal transduction	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: leucine-rich repeat-containing protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001399306.1 → NP_001386235.1 leucine-rich repeat-containing protein 30

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/TrEMBL

D3ZWX6

Related

ENSRNOP00000049562.2, ENSRNOT00000049720.4

Conserved Domains (2) summary

PRK15370
Location:59 → 227

PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP

sd00033
Location:72 → 94

LRR_RI; leucine-rich repeat [structural motif]