U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01931 long intergenic non-protein coding RNA 1931 [ Homo sapiens (human) ]

    Gene ID: 150596, updated on 10-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC01931provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1931provided by HGNC
    Primary source
    HGNC:HGNC:52743
    See related
    Ensembl:ENSG00000162947 AllianceGenome:HGNC:52743
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC01931 in Genome Data Viewer
    Location:
    2q23.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (149767506..149859191, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (150217944..150309301, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (150624020..150715705, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MMADHC divergent transcript Neighboring gene RNA, U6 small nuclear 601, pseudogene Neighboring gene uncharacterized LOC105373680 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:150734031-150735230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:150755802-150756393 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150818658-150819158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150819159-150819659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150891977-150892477 Neighboring gene MPRA-validated peak3898 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:150973602-150973830 Neighboring gene uncharacterized LOC105373682 Neighboring gene long intergenic non-protein coding RNA 1818 Neighboring gene long intergenic non-protein coding RNA 1817

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

    Go to the top of the page Help

    Markers

    Clone Names

    • FLJ32955, AC007364.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_145421.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK057517
      Related
      ENST00000295052.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      149767506..149859191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      150217944..150309301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_153041.1: Suppressed sequence

      Description
      NM_153041.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.