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    DMXL1-DT DMXL1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105379143, updated on 10-Dec-2024

    Summary

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    Official Symbol
    DMXL1-DTprovided by HGNC
    Official Full Name
    DMXL1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55568
    See related
    AllianceGenome:HGNC:55568
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See DMXL1-DT in Genome Data Viewer
    Location:
    5q23.1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (118996312..119070890, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (119509377..119583875, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (118332007..118406585, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901052 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:118134858-118136057 Neighboring gene NANOG hESC enhancer GRCh37_chr5:118158043-118158570 Neighboring gene DTW domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118282316-118282836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118282837-118283356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118285193-118285694 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:118286400-118287290 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16260 Neighboring gene microRNA 1244-2 Neighboring gene N-acetylneuraminic acid phosphatase pseudogene Neighboring gene prothymosin alpha pseudogene 2 Neighboring gene CATSPER2 pseudogene 2 Neighboring gene RNA, U6 small nuclear 373, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:118374017-118374522 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:118385414-118385914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22958 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16261 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16263 Neighboring gene Dmx like 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:118456778-118457628 Neighboring gene septin 7 pseudogene 10 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134249.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC008629, BC036311

    2. NR_134250.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs at both the 5' and 3' ends and is shorter than variant 1.
      Source sequence(s)
      DB288884

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      118996312..119070890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      119509377..119583875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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