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    LINC01206 long intergenic non-protein coding RNA 1206 [ Homo sapiens (human) ]

    Gene ID: 100996490, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01206provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1206provided by HGNC
    Primary source
    HGNC:HGNC:49637
    See related
    Ensembl:ENSG00000242512 AllianceGenome:HGNC:49637
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 8.9) See more
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    Genomic context

    See LINC01206 in Genome Data Viewer
    Location:
    3q26.33
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (181952364..182010678)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (184756899..184815219)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (181670152..181728466)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:181566286-181566907 Neighboring gene Sharpr-MPRA regulatory region 859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:181584513-181585012 Neighboring gene PSMG3 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:181643649-181644242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:181644243-181644834 Neighboring gene RN7SK pseudogene 265 Neighboring gene uncharacterized LOC105374242 Neighboring gene NANOG hESC enhancer GRCh37_chr3:181839149-181839650 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:181857572-181858371 Neighboring gene uncharacterized LOC105374243

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104146.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC012081, AC026359
      Related
      ENST00000482787.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      181952364..182010678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      184756899..184815219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)