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    CYCSP39 CYCS pseudogene 39 [ Homo sapiens (human) ]

    Gene ID: 342358, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CYCSP39provided by HGNC
    Official Full Name
    CYCS pseudogene 39provided by HGNC
    Primary source
    HGNC:HGNC:24412
    See related
    AllianceGenome:HGNC:24412
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HC1; HCP39
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    Genomic context

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    See CYCSP39 in Genome Data Viewer
    Location:
    16p12.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25454141..25454716, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (25730639..25731214, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25465462..25466037, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25268532-25269092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10608 Neighboring gene zinc finger with KRAB and SCAN domains 2 Neighboring gene ZKSCAN2 divergent transcript Neighboring gene NANOG hESC enhancer GRCh37_chr16:25422594-25423095 Neighboring gene long intergenic non-protein coding RNA 2191 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25453167-25454366 Neighboring gene uncharacterized LOC105371147 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:25564716-25565915 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25580065-25581264 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25586609-25587370 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25644366-25645565 Neighboring gene uncharacterized LOC105369297

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Evans MJ, et al. Proc Natl Acad Sci U S A, 1988 Dec. PMID 2849112, Free PMC Article
    2. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • cytochrome c, somatic pseudogene 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_002988.3 

      Range
      101..676
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      25454141..25454716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      25730639..25731214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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