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    ACTE1P actin epsilon 1, pseudogene [ Homo sapiens (human) ]

    Gene ID: 399923, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ACTE1Pprovided by HGNC
    Official Full Name
    actin epsilon 1, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:51491
    See related
    Ensembl:ENSG00000293435 AllianceGenome:HGNC:51491
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See ACTE1P in Genome Data Viewer
    Location:
    11q13.4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (71405746..71423354, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (71332735..71350297, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (71116792..71134400, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene SH3 and multiple ankyrin repeat domains 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70732137-70732636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70737866-70738791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70751855-70752356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70752357-70752856 Neighboring gene microRNA 3664 Neighboring gene MPRA-validated peak1330 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70819961-70820462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70820463-70820962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70850430-70851309 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70851310-70852188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70909445-70910320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70910321-70911195 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70916186-70916782 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:70916783-70917377 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70925881-70926462 Neighboring gene Sharpr-MPRA regulatory region 1844 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70955112-70955856 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70955857-70956600 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70956601-70957344 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:70957345-70958088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:70979141-70979640 Neighboring gene uncharacterized LOC124902706 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:71012233-71012890 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:71009949-71011148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5165 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71054609-71055108 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71100061-71100562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71100563-71101062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71107588-71108289 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71110671-71111514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71113580-71114080 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3707 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:71159471-71159972 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5166 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5167 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71164405-71164906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71164907-71165406 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:71169226-71169406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71183373-71184280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:71184281-71185187 Neighboring gene DHCR7 divergent transcript Neighboring gene NAD synthetase 1 Neighboring gene 7-dehydrocholesterol reductase Neighboring gene microRNA 6754

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ42102

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038862.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP002387
      Related
      ENST00000331301.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      71405746..71423354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      71332735..71350297 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001680.1: Suppressed sequence

      Description
      NM_001001680.1: This RefSeq was permanently suppressed because the transcript is not abundant, the annotated CDS has sequence similarity to the MIR repeat, and the protein is not supported.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZVU0.1 GenPept UniProtKB/Swiss-Prot:Q6ZVU0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials