U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SLC19A4P solute carrier family 19 member 4, pseudogene [ Homo sapiens (human) ]

    Gene ID: 56918, updated on 9-Dec-2024

    Summary

    Official Symbol
    SLC19A4Pprovided by HGNC
    Official Full Name
    solute carrier family 19 member 4, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:25344
    See related
    Ensembl:ENSG00000290795 AllianceGenome:HGNC:25344
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C2orf83
    Summary
    Predicted to enable vitamin transmembrane transporter activity. Predicted to be involved in nitrogen compound transport and vitamin transmembrane transport. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SLC19A4P in Genome Data Viewer
    Location:
    2q36.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (227610090..227633320, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (228092745..228115991, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (228474806..228498036, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small cysteine and glycine repeat containing 2 Neighboring gene MPRA-validated peak4071 silencer Neighboring gene small cysteine and glycine repeat containing 10 (gene/pseudogene) Neighboring gene spore coat protein SP96 Neighboring gene small cysteine and glycine repeat containing 3 Neighboring gene small cysteine and glycine repeat containing 4 Neighboring gene solute carrier family 19 member 3 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:228531168-228531668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:228531669-228532169 Neighboring gene small cysteine and glycine repeat containing 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Other Names

    • folate transporter-like protein C2orf83

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables vitamin transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in vitamin transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172911.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC064853
      Related
      ENST00000409066.1
    2. NR_172912.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC064853
      Related
      ENST00000264387.8

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      227610090..227633320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      228092745..228115991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001162483.2: Suppressed sequence

      Description
      NM_001162483.2: This RefSeq was removed because it is now thought that this gene does encode a protein.
    2. NM_020161.4: Suppressed sequence

      Description
      NM_020161.4: This RefSeq was removed because it is now thought that this gene does not encode a protein.