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    Shisal2b shisa like 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499520, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Shisal2bprovided by RGD
    Official Full Name
    shisa like 2Bprovided by RGD
    Primary source
    RGD:1564672
    See related
    EnsemblRapid:ENSRNOG00000013372 AllianceGenome:RGD:1564672
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam159b; RGD1564672
    Summary
    Predicted to be located in membrane. Orthologous to human SHISAL2B (shisa like 2B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 20.0), Brain (RPKM 2.3) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Shisal2b in Genome Data Viewer
    Location:
    2q13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (37736377..37754126, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (36002622..36019529, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (34946713..34965597, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene CWC27 spliceosome associated cyclophilin Neighboring gene SREK1-interacting protein 1 Neighboring gene regulator of G-protein signaling 7 binding protein Neighboring gene trifunctional nucleotide phosphoesterase protein YfkN-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    membrane protein FAM159B; protein shisa-like-2B
    Names
    family with sequence similarity 159, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      37736377..37754126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_574844.9 → XP_574844.3  protein shisa-like-2B

      See identical proteins and their annotated locations for XP_574844.3

      Related
      ENSRNOP00000017869.5, ENSRNOT00000017870.7
      Conserved Domains (1) summary
      pfam13908
      Location:108 → 189
      Shisa; Wnt and FGF inhibitory regulator
    Nucleotide Protein Strain
    Heading Accession and Version

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