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    Rundc3b RUN domain containing 3B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688590, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rundc3bprovided by RGD
    Official Full Name
    RUN domain containing 3Bprovided by RGD
    Primary source
    RGD:1587590
    See related
    EnsemblRapid:ENSRNOG00000008463 AllianceGenome:RGD:1587590
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human RUNDC3B (RUN domain containing 3B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 73.2), Testes (RPKM 10.0) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rundc3b in Genome Data Viewer
    Location:
    4q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (26417501..26554404)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (25462543..25599477)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (22443727..22589526)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C11orf98 homolog Neighboring gene uncharacterized LOC120102221 Neighboring gene ATP binding cassette subfamily B member 4 Neighboring gene uncharacterized LOC120102222 Neighboring gene ATP-binding cassette, sub-family B member 1B Neighboring gene ATP binding cassette subfamily B member 1A Neighboring gene solute carrier family 25, member 40 Neighboring gene DBF4-CDC7 kinase regulatory subunit Neighboring gene ADAM metallopeptidase domain 22 Neighboring gene transfer RNA proline (anticodon AGG) 72

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth. Mertz J, et al. Mol Cell Proteomics, 2015 Jul. PMID 25931508, Free PMC Article
    2. Identification and characterization of the BRI2 interactome in the brain. Martins F, et al. Sci Rep, 2018 Feb 23. PMID 29476059, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC124740

    General protein information

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    Preferred Names
    RUN domain-containing protein 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047116.2 → NP_001040581.1  RUN domain-containing protein 3B

      See identical proteins and their annotated locations for NP_001040581.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q3B7K9
      Related
      ENSRNOP00000035622.4, ENSRNOT00000030224.7
      Conserved Domains (1) summary
      pfam02759
      Location:61 → 184
      RUN; RUN domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      26417501..26554404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236003.5 → XP_006236065.1  RUN domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_006236065.1

      UniProtKB/TrEMBL
      A0A0G2JVF1, A6K237
      Related
      ENSRNOP00000069461.1, ENSRNOT00000087657.3
      Conserved Domains (1) summary
      pfam02759
      Location:61 → 184
      RUN; RUN domain

    2. XM_039108366.2 → XP_038964294.1  RUN domain-containing protein 3B isoform X2

      Conserved Domains (2) summary
      PRK04778
      Location:139 → 218
      PRK04778; septation ring formation regulator EzrA; Provisional
      cl02689
      Location:37 → 71
      RUN; RUN domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3B7K9.1 GenPept UniProtKB/Swiss-Prot:Q3B7K9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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