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    LOC102555217 zinc finger protein 120-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102555217, updated on 9-Dec-2024

    Summary

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    Symbol
    LOC102555217provided by RGD
    Full Name
    zinc finger protein 120-likeprovided by RGD
    Primary source
    RGD:7717583
    See related
    EnsemblRapid:ENSRNOG00000065630 AllianceGenome:RGD:7717583
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF788P (zinc finger family member 788, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 84.5), Adrenal (RPKM 31.3) and 9 other tissues See more
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    Genomic context

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    See LOC102555217 in Genome Data Viewer
    Location:
    3q41
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (159056150..159086068)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (138595665..138627247)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (145810334..145834422, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 69 like Neighboring gene TEA domain transcription factor 2, pseudogene 1 Neighboring gene ribonuclease T2, pseudogene 1 Neighboring gene zinc finger protein 442 Neighboring gene uncharacterized LOC134486179

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 120-like
    Names
    zinc finger protein OZF-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419897.1 → NP_001406826.1  zinc finger protein 120-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    2. NM_001419898.1 → NP_001406827.1  zinc finger protein 120-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      159056150..159086068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282979.1 → XP_063139049.1  zinc finger protein 120-like isoform X2

    2. XM_063282982.1 → XP_063139052.1  zinc finger protein 120-like isoform X5

    3. XM_039106638.2 → XP_038962566.1  zinc finger protein 120-like isoform X2

      Related
      ENSRNOP00000079170.2, ENSRNOT00000105216.2
      Conserved Domains (4) summary
      COG5048
      Location:197 → 367
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:217 → 237
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:174 → 198
      zf-H2C2_2; Zinc-finger double domain

    4. XM_063282983.1 → XP_063139053.1  zinc finger protein 120-like isoform X5

    5. XM_063282985.1 → XP_063139055.1  zinc finger protein 120-like isoform X7

    6. XM_063282978.1 → XP_063139048.1  zinc finger protein 120-like isoform X1

      Related
      ENSRNOP00000094414.2, ENSRNOT00000106218.2

    7. XM_063282981.1 → XP_063139051.1  zinc finger protein 120-like isoform X4

    8. XM_063282980.1 → XP_063139050.1  zinc finger protein 120-like isoform X3

    9. XM_063282984.1 → XP_063139054.1  zinc finger protein 120-like isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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